Hoodini
Large-scale gene neighborhood analysis and visualization that feels like magic.
A modern toolkit for gene-centric comparative genomics that does everything for you.
Try in ColabBuilt for researchers
Everything you need to analyze genomic context, from data retrieval to publication.
Automated & fast retrieval
Fetch assemblies and annotations directly from NCBI. Just provide protein or nucleotide IDs. Analyze thousands of neighborhoods in minutes with optimized pipelines
Rich annotations
Run external tools such as PADLOC, DefenseFinder, CRISPR-Cas typer, and geNomad annotations to retrieve informative annotations.
Publication ready
Export high-resolution SVG figures with highly customizable styling.
Three tools, one ecosystem
Choose the right tool for your workflow.
Hoodini
Python command-line tool. The computational backbone for data processing, analysis, and portable HTML generation.
Hoodini Viz
React visualization library with GPU acceleration. Build custom apps and integrate Hoodini-viz.
Hoodini Colab
Interactive widget for Google Colab. Run analyses in the Google Colab cloud with zero setup required.
Simple by design
From ID to visualization in one command.
# Run with default options
hoodini run --input WP_012345678.1
Start analyzing today
Fully open source. Free forever. Built for the research community.